Basic Information
Locus ID:
populus_peu26079
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 18175261 | 18180162 | + | populus_peu26079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 42,906.82 Da | 31.49 | 96.76 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 65 | 324 | 4.9E-86 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 327 | 381 | 8.37E-5 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 64 | 323 | 9.88E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 92 | 388 | 4.3E-92 | IPR027417 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 62 | 380 | 5.5E-100 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 255 | 329 | 18.120544 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 93 | 252 | 24.25149 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 270 | 278 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 300 | 329 | 1.7E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 185 | 214 | 1.7E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 151 | 180 | 1.7E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 223 | 252 | 1.7E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 267 | 295 | 1.7E-57 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_011039453.1 | PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X2 [Populus euphratica] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1XBB6 | RECA_2 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G057700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology