Basic Information
Locus ID:
populus_peu26065
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 18003474 | 18008466 | + | populus_peu26065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 34,216.94 Da | 45.37 | 75.03 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 170 | 298 | 4.35149E-65 | - |
| CDD | cd16571 | RING-HC_SIAHs | 54 | 92 | 4.87635E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 98 | 297 | 2.6E-82 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 50 | 95 | 1.21E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 109 | 300 | 2.29E-48 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 297 | 9.8E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 110 | 7.9E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 164 | 2.9E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 109 | 169 | 14.381762 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 92 | 9.199359 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_011039471.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Populus euphratica] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | B9IIA7 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_016G059700 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology