Basic Information
Locus ID:
populus_peu26044
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 17770881 | 17778631 | + | populus_peu26044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 50,656.89 Da | 34.25 | 99.89 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05498 | Rapid ALkalinization Factor (RALF) | 24 | 53 | 1.4E-9 | IPR008801 |
| Pfam | PF13855 | Leucine rich repeat | 234 | 293 | 1.2E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 380 | 401 | 0.076 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 96 | 433 | 1.6E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 257 | 447 | 3.2E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 256 | 4.2E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 85 | 181 | 8.5E-16 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 160 | 183 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 232 | 255 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 208 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 256 | 279 | 2.8 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 139 | 161 | 7.688853 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 140 | 153 | 8.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 208 | 221 | 8.0E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33775.1 | ralf-like 19. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. | 0 |
| RefSeq | XP_011039500.1 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X3 [Populus euphratica] | 0 |
| Q6NME6 | Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7Y1T3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_051534 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19151, jg24283 |
| Brassicaceae | Brassica nigra | 1 | BniB08g059010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0910, Ceq04G0500 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.1473 |
| Poaceae | Oryza coarctata | 1 | Oco18G002890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.130 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11097, nbisL1-mrna-24160 |
| Rhizophoraceae | Rhizophora mangle | 8 | nbisL1-mrna-15312, nbisL1-mrna-15313, nbisL1-mrna-15314 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu26044 |