Basic Information
Locus ID:
populus_peu26016
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 17518457 | 17530482 | - | populus_peu26016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 131,263.00 Da | 46.32 | 79.32 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 195 | 522 | 1.81274E-165 | - |
| CDD | cd00121 | MATH | 53 | 177 | 2.13132E-39 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 873 | 4.0E-76 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 518 | 1.4E-44 | IPR001394 |
| Pfam | PF00917 | MATH domain | 59 | 179 | 1.4E-19 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 883 | 1094 | 3.3E-58 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 186 | 7.85E-42 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 549 | 3.92E-96 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 193 | 2.3E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 799 | 896 | 1.1E-25 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 522 | 7.0E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 798 | 6.1E-44 | - |
| SMART | SM00061 | math_3 | 54 | 158 | 2.7E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 521 | 39.359386 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 38.903259 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| Coils | Coil | Coil | 537 | 557 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_011042518.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Populus euphratica] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3N7HX82 | ubiquitinyl hydrolase 1 OS=Populus trichocarpa OX=3694 GN=POPTR_016G064100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology