Basic Information
Locus ID:
populus_peu25975
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 17088852 | 17091508 | + | populus_peu25975 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 50,066.68 Da | 43.78 | 72.91 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 152 | 421 | 1.54307E-42 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 164 | 227 | 8.6E-10 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 386 | 421 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 285 | 4.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 336 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 121 | 422 | 7.94E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 79 | 424 | 3.1E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 382 | 421 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 336 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 285 | 3.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 379 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 241 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 202 | 4.8E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 389 | 422 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 170 | 202 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 170 | 211 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 253 | 285 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 389 | 422 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 285 | 13.549507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 408 | 422 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_011042575.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Populus euphratica] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | B9IIJ8 | ANAPC4_WD40 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G068700 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology