Basic Information
Locus ID:
populus_peu25966
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 16972663 | 16974787 | + | populus_peu25966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 45,928.21 Da | 45.04 | 107.18 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 7.5544E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 75 | 3.2E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 98 | 390 | 8.83E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 78 | 2.06E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 4.5E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 94 | 391 | 2.1E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 5.8E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 41.939228 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011042586.1 | PREDICTED: E3 ubiquitin-protein ligase PUB22 [Populus euphratica] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | B9IIK9 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_016G069400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology