Basic Information
Locus ID:
populus_peu25965
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 16967343 | 16969324 | + | populus_peu25965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.43 | 40,089.46 Da | 49.76 | 98.58 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 60 | 3.7E-8 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 64 | 9.71E-15 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 84 | 314 | 1.27E-8 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 63 | 3.3E-16 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 64 | 316 | 2.3E-7 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 1 | 56 | 4.9E-9 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 63 | 22.266394 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_034917203.1 | E3 ubiquitin-protein ligase PUB24-like [Populus alba] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Y872 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_052676 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology