Basic Information
Locus ID:
populus_peu25844
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 14841079 | 14843133 | - | populus_peu25844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 51,543.76 Da | 39.91 | 103.50 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 54 | 2.08133E-20 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 2.6E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 83 | 3.04E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 102 | 385 | 1.73E-10 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 395 | 1.2E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 82 | 6.7E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 75 | 6.2E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 82 | 40.240856 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011021424.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Populus euphratica] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2ZT82 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_001914 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology