Basic Information
Locus ID:
populus_peu25841
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 14782901 | 14784558 | + | populus_peu25841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 46,547.70 Da | 48.03 | 110.22 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 1.66878E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 75 | 9.4E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 77 | 3.53E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 378 | 3.84E-16 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 393 | 2.5E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 81 | 7.7E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 1.4E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 39.984329 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011021423.1 | PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Populus euphratica] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2ZTM1 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_001916 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology