Basic Information
Locus ID:
populus_peu25760
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 12965719 | 12969514 | + | populus_peu25760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 28,164.59 Da | 38.70 | 75.39 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 199 | 239 | 1.25583E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 198 | 244 | 1.5E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 245 | 3.26E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 249 | 7.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 200 | 238 | 4.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 200 | 239 | 10.999225 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011013256.1 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Populus euphratica] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | B9IFM5 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_016G089000 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology