Basic Information
Locus ID:
populus_peu25696
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 9654579 | 9657055 | - | populus_peu25696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 23,156.90 Da | 51.54 | 87.01 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 86 | 138 | 2.25433E-12 | - |
| Pfam | PF12906 | RING-variant domain | 86 | 137 | 6.0E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 140 | 2.68E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 146 | 3.6E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 85 | 138 | 1.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 78 | 144 | 18.894684 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011011761.1 | PREDICTED: uncharacterized protein LOC105116226 [Populus euphratica] | 0 |
| TrEMBL | A0A2K1XDV6 | RING-CH-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G105900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology