Basic Information
Locus ID:
populus_peu25493
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 3614534 | 3626396 | + | populus_peu25493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 89,752.44 Da | 58.76 | 87.44 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 658 | 717 | 6.00271E-12 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 249 | 357 | 4.4E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 656 | 717 | 4.3E-8 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 655 | 718 | 1.82E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 126 | 384 | 4.57E-21 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 652 | 725 | 1.4E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 127 | 394 | 4.7E-27 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 654 | 718 | 6.4E-10 | IPR014720 |
| SMART | SM00577 | forpap2 | 235 | 368 | 1.9E-9 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 653 | 719 | 14.271627 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 16.335457 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 807 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_011047439.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Populus euphratica] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A4U5P259 | protein-serine/threonine phosphatase OS=Populus alba OX=43335 GN=D5086_0000235870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology