Basic Information
Locus ID:
populus_peu25480
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
GDSL esterase lipase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 3425396 | 3431438 | - | populus_peu25480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 28,529.29 Da | 45.36 | 93.99 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01838 | Isoamyl_acetate_hydrolase_like | 8 | 205 | 4.59013E-83 | - |
| Pfam | PF13472 | GDSL-like Lipase/Acylhydrolase family | 11 | 196 | 3.4E-21 | IPR013830 |
| SUPERFAMILY | SSF52266 | SGNH hydrolase | 7 | 208 | 1.68E-32 | - |
| Gene3D | G3DSA:3.40.50.1110 | SGNH hydrolase | 4 | 233 | 1.3E-58 | IPR036514 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11210.1 | SGNH hydrolase-type esterase superfamily protein. | 0 |
| RefSeq | XP_011006553.1 | PREDICTED: GDSL esterase/lipase CPRD49-like isoform X1 [Populus euphratica] | 0 |
| Q7XXR3 | GDSL esterase/lipase WDL1 OS=Oryza sativa subsp. japonica OX=39947 GN=WDL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1XED0 | SGNH_hydro domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G116100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14275, jg14779, jg3262, jg3263, jg34131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24297 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21422, Sbi_jg22433 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16313 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016448 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62866, Sgl67481 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018539, gene:ENSEOMG00000020643 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0019770, CQ.Regalona.r1.2AG0021490 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30176880, pistato.v30269850 |
| Apiaceae | Apium graveolens | 2 | Ag5G01414, Ag8G00094 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G005270, contig69543397G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704017, gene-LOC103715137, gene-LOC103715941 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.19.V1.1, AsparagusV1_07.2101.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G23662, Ftri8G27274, Ftri9G05926 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G38180.1, AT3G11210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017306m.g.v1.0, Thhalv10021365m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g09490.v2.2, Sp4g20500.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g006680.2N, BniB01g053850.2N, BniB07g057120.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq02G0141, Ceq04G1468, Ceq08G1019, Ceq08G1415 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0157, Cgl08G1041, Cgl08G1043 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g18640 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g13100 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1021, evm.TU.LG02.1867 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00002751, Pov_00006515, Pov_00006517, Pov_00011804 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02621 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1936, BH05.2057, CH05.2129 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0693430, gene-QOZ80_9BG0719190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0357220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065335 |
| Poaceae | Oryza coarctata | 2 | Oco21G010310, Oco22G011640 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g48070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G119000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G013450, Chr16G003830, Chr17G003530, Chr26G000250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G215300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG028710, gene_TRIDC4BG021750 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G178800.2, TraesCS4B02G139000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb065870_P002, Zm00001eb433910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18446, nbis-gene-45947 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18302, Zma_g19174 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.Contig33.3, evm.TU.LG17.1008 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00040 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1814, evm.TU.Scaffold_2_RagTag.634 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-25912, nbisL1-mrna-4556, nbisL1-mrna-5600 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1390, nbisL1-mrna-16650 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1446, nbisL1-mrna-3701, nbisL1-mrna-3702 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.620, evm.TU.utg000009l.1022 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001383, Maker00006086, Maker00016377 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17794, nbisL1-mrna-1980, nbisL1-mrna-4957 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13761, nbisL1-mrna-9297 |
| Salicaceae | Populus euphratica | 7 | populus_peu05349, populus_peu05350, populus_peu06543 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608907, gene-LOC132630778 |
| Solanaceae | Solanum chilense | 2 | SOLCI001422300, SOLCI001770900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021046, gene-LOC107032392 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21536_chr08_+, gene_5425 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1771, TC05G1818 |
| Zosteraceae | Zostera marina | 1 | Zosma04g15690.v3.1 |