Basic Information
Locus ID:
populus_peu25466
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
CPK13
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 3095838 | 3101649 | + | populus_peu25466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 55,153.92 Da | 43.20 | 77.75 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 53 | 271 | 1.09824E-102 | - |
| Pfam | PF13499 | EF-hand domain pair | 318 | 378 | 8.7E-10 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 87 | 272 | 2.6E-49 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 390 | 453 | 3.1E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 296 | 465 | 1.45E-44 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 297 | 7.15E-66 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 81 | 109 | 4.8E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 110 | 280 | 4.9E-54 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 281 | 456 | 1.0E-52 | - |
| SMART | SM00054 | efh_1 | 427 | 455 | 2.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 391 | 419 | 2.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 319 | 347 | 2.8E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 54 | 272 | 8.1E-59 | IPR000719 |
| SMART | SM00054 | efh_1 | 355 | 383 | 1.2 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 272 | 30.788811 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 351 | 386 | 8.264835 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 423 | 458 | 14.150764 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 387 | 422 | 14.876045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 315 | 350 | 15.88028 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 134 | 146 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 436 | 448 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 400 | 412 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 328 | 340 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_011004764.1 | PREDICTED: calcium-dependent protein kinase 13 [Populus euphratica] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | B9IGA3 | Calcium-dependent protein kinase 13 OS=Populus trichocarpa OX=3694 GN=POPTR_016G117200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology