Basic Information
Locus ID:
populus_peu25456
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 2957290 | 2960296 | - | populus_peu25456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 51,015.76 Da | 49.58 | 77.62 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 163 | 433 | 9.09241E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 433 | 0.0022 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 180 | 238 | 1.2E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 348 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 297 | 1.6E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 153 | 433 | 2.43E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 87 | 436 | 6.5E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 306 | 348 | 8.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 391 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 128 | 169 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 252 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 433 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 5.5E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 297 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 401 | 434 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 401 | 434 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 213 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 297 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 10.809215 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 420 | 434 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_011004748.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Populus euphratica] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | U5FR10 | ANAPC4_WD40 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G118400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology