Basic Information
Locus ID:
populus_peu25443
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 2808701 | 2812270 | - | populus_peu25443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 65,046.44 Da | 30.91 | 93.03 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 3.46637E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 5.52966E-90 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 352 | 2.7E-19 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 210 | 4.2E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 7.9E-15 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 6.66E-41 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 236 | 382 | 3.05E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 218 | 5.29E-44 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 217 | 1.7E-60 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 401 | 587 | 9.9E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 1.1E-40 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 600 | 5.9E-209 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 465 | 484 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_011046856.1 | PREDICTED: pyruvate decarboxylase 2 [Populus euphratica] | 0 |
| Q9M040 | Pyruvate decarboxylase 4 OS=Arabidopsis thaliana OX=3702 GN=PDC4 PE=2 SV=1 | 0 | |
| TrEMBL | B9IGD0 | pyruvate decarboxylase OS=Populus trichocarpa OX=3694 GN=POPTR_016G120100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology