Basic Information
Locus ID:
populus_peu25077
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 18622264 | 18622899 | + | populus_peu25077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 23,482.05 Da | 45.05 | 95.17 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 164 | 205 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 209 | 1.96E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 211 | 3.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 204 | 6.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 205 | 12.430266 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_006373430.3 | E3 ubiquitin-protein ligase SIS3 [Populus trichocarpa] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2WRD5 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_028030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1490 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11977 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1166 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11006 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.360 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013999 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20853 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15443 |
| Salicaceae | Populus euphratica | 4 | populus_peu09437, populus_peu24083, populus_peu24085 ... |