Basic Information
Locus ID:
populus_peu25002
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 19312496 | 19320258 | - | populus_peu25002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 42,055.72 Da | 49.56 | 82.93 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 167 | 216 | 2.54696E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.11917E-31 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 351 | 393 | 1.6375E-23 | - |
| Pfam | PF00627 | UBA/TS-N domain | 355 | 390 | 4.2E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 275 | 330 | 8.6E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.5E-21 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 173 | 211 | 3.4E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 170 | 223 | 1.17E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 271 | 336 | 2.62E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 2.03E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 335 | 398 | 9.05E-16 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 166 | 216 | 5.2E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.5E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 347 | 394 | 4.8E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 265 | 331 | 2.4E-27 | IPR036353 |
| SMART | SM00727 | CBM | 273 | 316 | 3.9E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.1E-23 | IPR000626 |
| SMART | SM00165 | uba_6 | 355 | 392 | 5.5E-10 | IPR015940 |
| SMART | SM00165 | uba_6 | 173 | 213 | 6.8E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 398 | 3.7E-119 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 171 | 214 | 12.16134 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 20.936256 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 352 | 393 | 15.438546 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 366 | 380 | 4.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 381 | 396 | 4.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 301 | 323 | 4.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 349 | 365 | 4.2E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 144 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_011021231.1 | PREDICTED: ubiquitin receptor RAD23d isoform X1 [Populus euphratica] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | U5GIJ0 | Ubiquitin receptor RAD23 OS=Populus trichocarpa OX=3694 GN=POPTR_017G114000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology