Basic Information
Locus ID:
populus_peu24954
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 19765894 | 19767768 | + | populus_peu24954 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 61,036.68 Da | 46.58 | 109.36 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 59 | 3.3E-5 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 157 | 378 | 1.14E-18 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 73 | 8.5E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 247 | 7.6E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 248 | 537 | 2.2E-10 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 70 | 1.7E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 69 | 9.656436 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011021298.1 | PREDICTED: uncharacterized protein LOC105123415 [Populus euphratica] | 0 |
| TrEMBL | A0A3N7I1H3 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G119200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2233, Ceq07G1992 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G2490, Cgl01G2516, Cgl01G2517, Cgl07G2181 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.795 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11911 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9044 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18265 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7920 |
| Salicaceae | Populus euphratica | 5 | populus_peu09581, populus_peu12799, populus_peu12841 ... |