Basic Information
Locus ID:
populus_peu24824
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 20891693 | 20892912 | + | populus_peu24824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 41,856.44 Da | 38.66 | 103.67 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 1 | 34 | 5.55999E-19 | - |
| Pfam | PF04564 | U-box domain | 1 | 59 | 7.4E-15 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 64 | 4.52E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 105 | 331 | 6.91E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 61 | 3.8E-20 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 82 | 351 | 5.8E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 1 | 54 | 1.2E-17 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 61 | 32.076275 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_011038250.1 | PREDICTED: U-box domain-containing protein 21-like [Populus euphratica] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | U5FLQ4 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_017G135000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology