Basic Information
Locus ID:
populus_peu24444
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
thaumatin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 13523803 | 13524906 | + | populus_peu24444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 28,770.60 Da | 54.67 | 68.37 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09218 | TLP-PA | 36 | 253 | 7.28258E-111 | - |
| Pfam | PF00314 | Thaumatin family | 40 | 254 | 5.5E-77 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 35 | 255 | 2.88E-71 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 34 | 254 | 4.0E-77 | IPR037176 |
| SMART | SM00205 | tha2 | 36 | 254 | 1.9E-86 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 4 | 263 | 1.9E-93 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 36 | 254 | 36.990265 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 244 | 253 | 1.4E-14 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 83 | 94 | 1.4E-14 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 135 | 151 | 1.4E-14 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 35 | 47 | 1.4E-14 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40020.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_011008365.1 | PREDICTED: thaumatin-like protein [Populus euphratica] | 0 |
| P50699 | Thaumatin-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g18250 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7Y3E5 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_054969 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17846 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24504 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032565 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g040720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29883, Sbi_jg43346 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18544 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004304 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66347, Sgl70682 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013983, gene:ENSEOMG00000049097 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003340, CQ.Regalona.r1.2BG0007510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30174110 |
| Apiaceae | Apium graveolens | 1 | Ag4G00841 |
| Arecaceae | Cocos nucifera | 1 | scaffold000918G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716979 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2785.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17644 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G40020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027894m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g02040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g027240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1759 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1817 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4431 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.126 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023443 |
| Poaceae | Echinochloa crus-galli | 1 | AH01.2066 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0124230, gene-QOZ80_2BG0179820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0022570.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025404 |
| Poaceae | Oryza coarctata | 2 | Oco19G004130, Oco20G004120 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g27280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G247600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203267 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G009070, Chr13G015960 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G189100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017340, gene_TRIDC1BG017350 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G092200.2, TraesCS1B02G120000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb048140_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13228 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.221, evm.TU.Scaffold_6_RagTag.225 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15046 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-684 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-187 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.55 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008105 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21472 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17388 |
| Salicaceae | Populus euphratica | 1 | populus_peu24444 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622202 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010351 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2106 |