Basic Information
Locus ID:
populus_peu24416
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 12067656 | 12072101 | - | populus_peu24416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 51,352.68 Da | 49.98 | 82.02 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 22 | 51 | 3.04374E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 361 | 456 | 2.68208E-36 | - |
| Pfam | PF00397 | WW domain | 21 | 51 | 3.6E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 373 | 455 | 4.0E-20 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 186 | 313 | 4.4E-29 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 307 | 456 | 9.24E-32 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 145 | 349 | 2.45E-54 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 54 | 1.57E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 12 | 58 | 1.9E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 352 | 458 | 3.9E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 140 | 351 | 3.4E-66 | IPR027417 |
| SMART | SM00490 | helicmild6 | 401 | 470 | 7.4E-8 | IPR001650 |
| SMART | SM00456 | ww_5 | 20 | 53 | 8.8E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 181 | 364 | 8.0E-42 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 193 | 347 | 21.826403 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 376 | 471 | 14.801172 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 10.876201 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 162 | 190 | 11.072705 | IPR014014 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 139 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_011011886.1 | PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 14-like [Populus euphratica] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K1X4G3 | DEAD-box ATP-dependent RNA helicase 46 OS=Populus trichocarpa OX=3694 GN=POPTR_017G071400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology