Basic Information
Locus ID:
populus_peu24345
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 8230658 | 8232457 | + | populus_peu24345 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 43,528.46 Da | 42.84 | 88.80 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 44 | 241 | 1.11843E-134 | - |
| CDD | cd18787 | SF2_C_DEAD | 252 | 378 | 1.6099E-58 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 65 | 225 | 1.1E-37 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 265 | 373 | 5.9E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 109 | 380 | 3.58E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 247 | 5.9E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 248 | 383 | 1.8E-50 | IPR027417 |
| SMART | SM00490 | helicmild6 | 292 | 373 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 59 | 255 | 2.8E-53 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 240 | 28.868292 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 40 | 68 | 10.393079 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 251 | 384 | 21.448669 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_011038130.1 | PREDICTED: eukaryotic initiation factor 4A-15 [Populus euphratica] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7XVV7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_055998 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology