Basic Information
Locus ID:
populus_peu24341
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
AFB3
Description:
Protein AUXIN SIGNALING F-BOX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 7982388 | 7985173 | + | populus_peu24341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 59,790.75 Da | 46.26 | 99.29 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 1.6E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 2 | 41 | 5.3E-19 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 16 | 493 | 5.3E-38 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 1.0E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 533 | 8.8E-157 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 365 | 389 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 5.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 270.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 43 | 7.3E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_011009720.1 | PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Populus euphratica] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | B9N0V8 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G061600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology