Basic Information
Locus ID:
populus_peu24239
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 6003405 | 6010046 | + | populus_peu24239 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 33,550.08 Da | 62.16 | 69.87 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 41 | 126 | 1.04086E-51 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 43 | 126 | 1.8E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 136 | 3.53E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 36 | 137 | 1.7E-26 | IPR036431 |
| SMART | SM00501 | bright_3 | 40 | 131 | 1.3E-29 | IPR001606 |
| SMART | SM01014 | ARID_2 | 36 | 126 | 2.3E-28 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 39 | 130 | 25.865023 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 248 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_011041884.1 | PREDICTED: high mobility group B protein 15-like [Populus euphratica] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2WRV0 | High mobility group B protein 15 OS=Populus deltoides OX=3696 GN=H0E87_028438 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology