Basic Information
Locus ID:
populus_peu24185
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 5061142 | 5063214 | - | populus_peu24185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 42,752.47 Da | 59.44 | 76.17 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 174 | 217 | 5.6131E-17 | - |
| Pfam | PF13639 | Ring finger domain | 174 | 217 | 3.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 224 | 2.26E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 227 | 1.6E-21 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 171 | 225 | 0.003 | - |
| SMART | SM00184 | ring_2 | 175 | 216 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 217 | 12.902362 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011043096.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Populus euphratica] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6M2E6A2 | RING-type E3 ubiquitin transferase OS=Populus davidiana OX=266767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology