Basic Information
Locus ID:
populus_peu24085
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 2753004 | 2753847 | + | populus_peu24085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 26,737.66 Da | 42.29 | 84.81 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 191 | 233 | 3.22163E-15 | - |
| Pfam | PF13639 | Ring finger domain | 192 | 233 | 7.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 237 | 4.24E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 238 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 4.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 12.84335 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011037005.1 | PREDICTED: uncharacterized protein LOC105134334 [Populus euphratica] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QIG6 | RING-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000103870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1490 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11977 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1166 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11006 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.360 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013999 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20853 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15443 |
| Salicaceae | Populus euphratica | 4 | populus_peu09437, populus_peu24083, populus_peu24085 ... |