Basic Information
Locus ID:
populus_peu24042
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 2385597 | 2394709 | - | populus_peu24042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 69,740.97 Da | 52.14 | 59.90 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 150 | 200 | 7.31599E-17 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 219 | 281 | 1.2E-16 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 298 | 346 | 4.7E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 288 | 1.49E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 348 | 7.78E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 232 | 4.95E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 234 | 3.1E-20 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 277 | 473 | 4.9E-58 | - |
| SMART | SM00647 | ibrneu5 | 219 | 281 | 1.7E-24 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 285 | 355 | 0.032 | IPR002867 |
| SMART | SM00184 | ring_2 | 244 | 311 | 0.4 | IPR001841 |
| SMART | SM00184 | ring_2 | 150 | 203 | 0.24 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 146 | 359 | 52.443222 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 194 | 9.568184 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 263 | 272 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_011037072.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Populus euphratica] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | U5FKD8 | RBR-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_017G032000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology