Basic Information
Locus ID:
populus_peu23811
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 23120770 | 23131078 | + | populus_peu23811 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 104,733.85 Da | 43.51 | 76.94 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 752 | 903 | 9.55307E-55 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 285 | 553 | 2.37109E-53 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 667 | 704 | 9.3E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 305 | 508 | 1.9E-24 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 794 | 893 | 5.0E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 271 | 553 | 1.22E-22 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 561 | 950 | 1.04E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 665 | 716 | 1.66E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 380 | 514 | 8.9E-17 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 538 | 567 | 2.1E-6 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 661 | 768 | 7.8E-13 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 568 | 645 | 2.1E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 256 | 349 | 1.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 785 | 949 | 1.1E-54 | IPR027417 |
| SMART | SM00184 | ring_2 | 667 | 705 | 7.3E-5 | IPR001841 |
| SMART | SM00487 | ultradead3 | 281 | 543 | 2.3E-11 | IPR014001 |
| SMART | SM00490 | helicmild6 | 810 | 893 | 1.6E-16 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 783 | 946 | 14.004468 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 667 | 704 | 11.36805 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 682 | 691 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 176 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_011031224.1 | PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X1 [Populus euphratica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7ZDA4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_027772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology