Basic Information
Locus ID:
populus_peu23790
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22960164 | 22965115 | + | populus_peu23790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 54,849.23 Da | 37.13 | 106.36 | 0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 341 | 477 | 5.0E-11 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 60 | 224 | 3.4E-30 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 11 | 482 | 2.09E-71 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 484 | 4.0E-87 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 477 | 40.876343 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 353 | 368 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_011031259.1 | PREDICTED: organic cation/carnitine transporter 7-like [Populus euphratica] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YFU7 | MFS domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_014933 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology