Basic Information
Locus ID:
populus_peu23789
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22953455 | 22958713 | + | populus_peu23789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 58,218.84 Da | 42.07 | 104.50 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 370 | 503 | 1.4E-12 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 81 | 249 | 8.5E-31 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 32 | 509 | 1.57E-71 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 42 | 513 | 2.3E-88 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 49 | 505 | 39.600258 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 381 | 396 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_011031262.1 | PREDICTED: organic cation/carnitine transporter 7-like [Populus euphratica] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | U5G5F2 | MFS domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G003100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology