Basic Information
Locus ID:
populus_peu23737
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22487377 | 22494652 | - | populus_peu23737 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 33,958.50 Da | 55.29 | 81.16 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16490 | RING-CH-C4HC3_FANCL | 214 | 280 | 8.3173E-26 | - |
| Pfam | PF11793 | FANCL C-terminal domain | 211 | 287 | 9.7E-30 | IPR026850 |
| Pfam | PF18890 | FANCL UBC-like domain 2 | 17 | 105 | 3.2E-18 | IPR043898 |
| Pfam | PF18891 | FANCL UBC-like domain 3 | 107 | 203 | 1.7E-19 | IPR044037 |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 287 | 5.05E-10 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 17 | 104 | 3.0E-29 | IPR016135 |
| Gene3D | G3DSA:3.10.110.20 | - | 105 | 199 | 4.9E-27 | IPR043003 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 292 | 1.4E-28 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 211 | 288 | 5.4E-48 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65740.2 | zinc ion binding. | 0 |
| RefSeq | XP_011021808.1 | PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Populus euphratica] | 0 |
| Q9NW38 | E3 ubiquitin-protein ligase FANCL OS=Homo sapiens OX=9606 GN=FANCL PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2YF58 | E3 ubiquitin-protein ligase FANCL OS=Populus deltoides OX=3696 GN=H0E87_014885 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17329 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30204550 |
| Apiaceae | Apium graveolens | 1 | Ag4G01174 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G004750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704265 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2451.V1.1, AsparagusV1_06.1365.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G06593 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G65740.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004606m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g28840.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0428 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0446 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g21360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10587 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2619 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024118 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36408 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.754, BH01.896, CH01.913 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0217980, gene-QOZ80_3BG0263210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062229 |
| Poaceae | Oryza coarctata | 2 | Oco05G022350, Oco06G023240 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g51680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G096900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107445, Pt_Chr0107478 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G006420, Chr04G027710, Chr12G031030 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G098100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4AG040180 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G256800.1, TraesCS4B02G057700.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb172840_P001, Zm00001eb215660_P003 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g578 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g06710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1753 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17410 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16798 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12017 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1064 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007233 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15422 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3335 |
| Salicaceae | Populus euphratica | 1 | populus_peu23737 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618760 |
| Solanaceae | Solanum chilense | 1 | SOLCI005391400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012770 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16194 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0312 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30260.v3.1 |