Basic Information
Locus ID:
populus_peu23508
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 20504839 | 20510641 | + | populus_peu23508 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 58,159.21 Da | 55.86 | 72.21 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 176 | 228 | 1.21461E-25 | - |
| Pfam | PF12315 | Protein DA1 | 325 | 463 | 1.3E-73 | IPR022087 |
| Pfam | PF00412 | LIM domain | 176 | 231 | 1.6E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 466 | 501 | 2.1E-9 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 169 | 201 | 7.93E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 257 | 7.35E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 170 | 233 | 2.6E-14 | - |
| SMART | SM00132 | lim_4 | 175 | 227 | 9.5E-13 | IPR001781 |
| SMART | SM00726 | uim | 133 | 152 | 0.042 | IPR003903 |
| SMART | SM00726 | uim | 72 | 91 | 75.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 133 | 152 | 10.114342 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 174 | 234 | 11.8603 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 176 | 210 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 128 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_011025694.1 | PREDICTED: protein DA1-related 1 isoform X2 [Populus euphratica] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | B9HEM0 | LIM zinc-binding domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G032500 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology