Basic Information
Locus ID:
populus_peu22979
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4876953 | 4883862 | - | populus_peu22979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 36,148.90 Da | 41.09 | 96.32 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 35 | 83 | 1.55931E-16 | - |
| Pfam | PF12906 | RING-variant domain | 35 | 82 | 9.3E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 87 | 2.83E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 97 | 2.4E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 34 | 83 | 1.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 27 | 89 | 21.015474 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011005649.1 | PREDICTED: uncharacterized protein LOC105111876 [Populus euphratica] | 0 |
| Q8TCQ1 | E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 GN=MARCHF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YCQ5 | RING-CH-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_014241 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology