Basic Information
Locus ID:
populus_peu22761
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2412580 | 2413674 | - | populus_peu22761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 40,193.61 Da | 61.90 | 80.11 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 146 | 189 | 2.24032E-18 | - |
| Pfam | PF13639 | Ring finger domain | 146 | 189 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 196 | 1.44E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 197 | 2.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 147 | 188 | 2.7E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 143 | 197 | 4.8E-4 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 189 | 12.887609 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 312 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011012736.1 | PREDICTED: RING-H2 finger protein ATL54-like [Populus euphratica] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4U5N935 | RING-type E3 ubiquitin transferase OS=Populus alba OX=43335 GN=D5086_0000281180 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology