Basic Information
Locus ID:
populus_peu22430
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 47667 | 59473 | - | populus_peu22430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 120,384.51 Da | 43.11 | 76.39 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 329 | 657 | 7.53654E-89 | - |
| CDD | cd18793 | SF2_C_SNF | 856 | 1007 | 1.34916E-54 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 771 | 808 | 1.1E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 350 | 734 | 6.4E-68 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 898 | 997 | 6.0E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 665 | 1023 | 1.75E-52 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 315 | 657 | 1.91E-46 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 769 | 820 | 1.98E-11 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 672 | 1064 | 2.1E-61 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 760 | 821 | 9.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 300 | 394 | 1.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 421 | 511 | 5.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 512 | 670 | 6.0E-32 | IPR038718 |
| SMART | SM00184 | ring_2 | 771 | 809 | 7.3E-5 | IPR001841 |
| SMART | SM00487 | ultradead3 | 325 | 636 | 8.3E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 914 | 997 | 1.6E-16 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 344 | 619 | 12.521051 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 887 | 1038 | 12.909 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 771 | 808 | 11.36805 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 786 | 795 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_011031224.1 | PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X1 [Populus euphratica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7ZDA4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_027772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology