Basic Information
Locus ID:
populus_peu22203
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 31133216 | 31138150 | - | populus_peu22203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 72,059.55 Da | 42.01 | 98.45 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 264 | 306 | 2.74947E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 508 | 9.5E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 260 | 330 | 3.4E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 387 | 426 | 1.8E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 359 | 638 | 5.04E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 335 | 9.42E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 495 | 1.9E-36 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 333 | 3.9E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 121 | 1.0E-13 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 496 | 651 | 1.3E-20 | IPR011989 |
| SMART | SM00185 | arm_5 | 510 | 550 | 45.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 551 | 591 | 49.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 593 | 633 | 230.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 469 | 509 | 0.14 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 2.8E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 387 | 427 | 7.8E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 428 | 468 | 0.087 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 43.230701 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 398 | 440 | 12.127399 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 663 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_011042684.1 | PREDICTED: U-box domain-containing protein 13-like [Populus euphratica] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Z4U0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_032637 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology