Basic Information
Locus ID:
populus_peu22125
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
CUL1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 26949866 | 26950920 | - | populus_peu22125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 24,945.92 Da | 29.55 | 91.42 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 2 | 114 | 1.0E-34 | IPR001373 |
| Pfam | PF10557 | Cullin protein neddylation domain | 141 | 203 | 1.8E-26 | IPR019559 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 1 | 127 | 1.29E-38 | IPR036317 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 126 | 211 | 7.69E-29 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 127 | 211 | 2.7E-31 | IPR036388 |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 1 | 126 | 1.9E-40 | - |
| SMART | SM00884 | Cullin_Nedd8_2 | 138 | 205 | 4.3E-33 | IPR019559 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 1 | 86 | 17.30159 | IPR016158 |
| ProSitePatterns | PS01256 | Cullin family signature. | 184 | 211 | - | IPR016157 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02570.1 | cullin 1. Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. | 0 |
| RefSeq | XP_034895730.1 | cullin-1-like isoform X2 [Populus alba] | 0 |
| Q5ZC88 | Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J8QG52 | CULLIN_2 domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_006291 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag9G02226 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g35050.v2.2 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00015274, Pov_00015275, Pov_00032436 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0065850 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.195 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2021 |
| Salicaceae | Populus euphratica | 2 | populus_peu22125, populus_peu34274 |