Basic Information
Locus ID:
populus_peu22065
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 24999184 | 25002572 | + | populus_peu22065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 41,505.01 Da | 45.34 | 90.77 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 45 | 242 | 1.80111E-135 | - |
| CDD | cd18787 | SF2_C_DEAD | 253 | 366 | 1.80801E-48 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 65 | 226 | 3.7E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 266 | 366 | 6.9E-24 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 109 | 366 | 3.55E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 248 | 4.4E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 249 | 366 | 3.5E-42 | IPR027417 |
| SMART | SM00490 | helicmild6 | 293 | 366 | 6.2E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 59 | 256 | 1.9E-56 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 40 | 68 | 10.560987 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | 28.811705 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 366 | 18.585518 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_011010150.1 | PREDICTED: eukaryotic initiation factor 4A-8 [Populus euphratica] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A9PD17 | Eukaryotic initiation factor 4A-11 OS=Populus trichocarpa OX=3694 GN=POPTR_003G043700 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology