Basic Information
Locus ID:
populus_peu22056
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 24692978 | 24696284 | - | populus_peu22056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 49,876.78 Da | 48.23 | 94.09 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 70 | 267 | 1.45098E-134 | - |
| CDD | cd18787 | SF2_C_DEAD | 278 | 408 | 9.93602E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 291 | 399 | 9.5E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 90 | 251 | 5.6E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 134 | 419 | 3.17E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 274 | 438 | 8.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 55 | 273 | 7.1E-67 | IPR027417 |
| SMART | SM00490 | helicmild6 | 318 | 399 | 1.2E-30 | IPR001650 |
| SMART | SM00487 | ultradead3 | 84 | 281 | 1.9E-56 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 266 | 28.811705 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 277 | 438 | 25.307705 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 65 | 93 | 10.560987 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 212 | 220 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_011010150.1 | PREDICTED: eukaryotic initiation factor 4A-8 [Populus euphratica] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A9PD17 | Eukaryotic initiation factor 4A-11 OS=Populus trichocarpa OX=3694 GN=POPTR_003G043700 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology