Basic Information
Locus ID:
populus_peu21692
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14030646 | 14037907 | - | populus_peu21692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 163,833.34 Da | 38.90 | 107.30 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 284 | 571 | 4.48825E-94 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 596 | 800 | 1.1185E-96 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1213 | 1433 | 5.6343E-123 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 900 | 1190 | 1.58515E-79 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 622 | 753 | 1.2E-14 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1232 | 1380 | 2.2E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 914 | 1143 | 6.7E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 284 | 550 | 1.6E-25 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 622 | 814 | 1.13E-48 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1205 | 1441 | 1.87E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 277 | 576 | 1.02E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 901 | 1195 | 1.14E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 620 | 845 | 6.5E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1199 | 1451 | 6.5E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 866 | 1196 | 1.3E-52 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 262 | 582 | 1.2E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1241 | 1432 | 5.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 627 | 809 | 1.5E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1215 | 1449 | 17.587168 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 902 | 1178 | 34.42675 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 287 | 563 | 34.303158 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 575 | 824 | 19.2745 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 726 | 740 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_011042301.1 | PREDICTED: putative ABC transporter C family member 15 [Populus euphratica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YPF3 | ABC-type xenobiotic transporter OS=Populus trichocarpa OX=3694 GN=POPTR_010G055200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology