Basic Information
Locus ID:
populus_peu21467
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12222203 | 12227914 | - | populus_peu21467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 113,000.09 Da | 41.09 | 108.48 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 264 | 328 | 7.0E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 329 | 1.24E-17 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 194 | 533 | 4.8E-8 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 466 | 957 | 5.28E-41 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 452 | 1.2E-6 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 122 | 1.3E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 453 | 645 | 5.8E-20 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 864 | 996 | 9.7E-7 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 646 | 853 | 2.4E-27 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 333 | 1.7E-19 | IPR013083 |
| SMART | SM00185 | arm_5 | 407 | 446 | 8.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 672 | 713 | 64.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 577 | 619 | 310.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 874 | 914 | 43.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 536 | 576 | 41.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 759 | 799 | 180.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 4.9E-17 | IPR003613 |
| SMART | SM00185 | arm_5 | 716 | 757 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 802 | 842 | 0.4 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 727 | 755 | 8.9074 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 19.878054 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 547 | 589 | 9.1874 | IPR000225 |
| Coils | Coil | Coil | 196 | 216 | - | - |
| Coils | Coil | Coil | 61 | 88 | - | - |
| Coils | Coil | Coil | 126 | 153 | - | - |
| Coils | Coil | Coil | 343 | 363 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011030599.1 | PREDICTED: U-box domain-containing protein 44-like [Populus euphratica] | 0 |
| TrEMBL | A0A8T2XQD1 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_018752 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |