Basic Information
Locus ID:
populus_peu21235
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 10332847 | 10337091 | - | populus_peu21235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 33,077.90 Da | 42.59 | 86.48 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 39 | 97 | 2.2E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 24 | 108 | 3.66E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 32 | 105 | 2.2E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 37 | 106 | 1.5E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 110 | 10.820684 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 251 | 271 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_011021746.1 | PREDICTED: uncharacterized protein LOC105123737 [Populus euphratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7H917 | RRM domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G103600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology