Basic Information
Locus ID:
populus_peu21162
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 9687966 | 9693299 | - | populus_peu21162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 44,354.80 Da | 41.40 | 89.39 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 368 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 168 | 190 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 59 | 368 | 3.85E-33 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 59 | 376 | 4.1E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 329 | 370 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 327 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 233 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 191 | 0.0083 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 368 | 8.570195 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 63 | - | - |
| Coils | Coil | Coil | 27 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011038635.1 | PREDICTED: LOW QUALITY PROTEIN: SEC12-like protein 2 [Populus euphratica] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A4V5ZYJ9 | SEC12-like protein 2 OS=Populus alba OX=43335 GN=D5086_0000321000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology