Basic Information
Locus ID:
populus_peu21056
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 8717479 | 8731606 | - | populus_peu21056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 135,825.59 Da | 48.03 | 78.44 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 47 | 172 | 6.72742E-34 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1087 | 1130 | 2.86233E-18 | - |
| CDD | cd12108 | Hr-like | 653 | 800 | 3.85007E-24 | - |
| CDD | cd12108 | Hr-like | 306 | 434 | 6.9624E-18 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 303 | 436 | 3.9E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1135 | 1192 | 6.4E-24 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1087 | 1129 | 3.7E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 49 | 174 | 5.4E-11 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1087 | 1136 | 1.24E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1025 | 1080 | 1.57E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 191 | 2.4E-31 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 649 | 864 | 7.1E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1083 | 1132 | 1.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 306 | 452 | 2.2E-18 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1159 | 1200 | 3.6E-17 | - |
| SMART | SM00184 | ring_2 | 1088 | 1129 | 3.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1088 | 1130 | 11.205767 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1024 | 1087 | 29.504688 | IPR017921 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_011007589.1 | PREDICTED: uncharacterized protein LOC105113207 isoform X1 [Populus euphratica] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YSW4 | Zinc finger protein BRUTUS OS=Populus trichocarpa OX=3694 GN=POPTR_010G122200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology