Basic Information
Locus ID:
populus_peu20949
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7797390 | 7798419 | - | populus_peu20949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 15,851.11 Da | 57.48 | 88.05 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 52 | 95 | 4.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 101 | 2.65E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 100 | 1.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 53 | 94 | 3.7E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 49 | 103 | 0.0049 | - |
| SMART | SM00744 | ringv_2 | 52 | 95 | 0.0038 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 53 | 95 | 13.064645 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_011015548.1 | PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Populus euphratica] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | B9HWQ1 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G133300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology