Basic Information
Locus ID:
populus_peu20943
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
SAMDC
Description:
S-adenosylmethionine decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7752266 | 7754252 | - | populus_peu20943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 17,840.90 Da | 49.99 | 80.62 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08132 | S-adenosyl-l-methionine decarboxylase leader peptide | 46 | 90 | 1.0E-27 | IPR012511 |
| Pfam | PF01536 | Adenosylmethionine decarboxylase | 81 | 132 | 1.1E-16 | IPR001985 |
| SUPERFAMILY | SSF56276 | S-adenosylmethionine decarboxylase | 73 | 161 | 4.12E-28 | IPR016067 |
| Gene3D | G3DSA:3.60.90.10 | - | 61 | 134 | 1.1E-15 | - |
| ProSitePatterns | PS01336 | S-adenosylmethionine decarboxylase signature. | 113 | 123 | - | IPR018166 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25570.1 | Adenosylmethionine decarboxylase family protein. | 0 |
| RefSeq | XP_011008996.1 | PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like isoform X2 [Populus euphratica] | 0 |
| Q04694 | S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum OX=4113 GN=SAMDC PE=1 SV=1 | 0 | |
| TrEMBL | V4VEX4 | adenosylmethionine decarboxylase (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10033607mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34883, jg40141, jg9209 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008545 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017380, CQ.Regalona.r1.8BG0018410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264660 |
| Apiaceae | Apium graveolens | 4 | Ag5G02104, Ag6G00473, Ag6G01476, Ag8G02066 |
| Arecaceae | Cocos nucifera | 1 | scaffold012204G000030 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2579.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G31066, Ftri18G28328, Ftri8G32720 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G02468.1, AT3G25572.1, AT5G15948.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015839m.g.v1.0 |
| Brassicaceae | Brassica nigra | 5 | BniB01g061180.2N, BniB02g046830.2N, BniB04g058120.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2647, Ceq08G0807 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0815 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03270 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g07420, gene.Thate08g24020 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.388 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.2239, CH02.2260, CH03.2307 |
| Poaceae | Oryza coarctata | 1 | Oco03G015070 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G187600, gene-BS78_04G193000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204564, Pt_Chr0204619, Pt_Chr0302273 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G000080, Chr23G009610, Chr26G010140, Chr30G009870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G362300, Tel6E01G424500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G219400.1, TraesCS6B02G248900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb313410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21553 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2608, evm.TU.LG03.123, evm.TU.LG03.23 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02230 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.987, evm.TU.Scaffold_6_RagTag.439 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26305 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16623, nbisL1-mrna-344 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.237, evm.TU.utg000013l.552 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008171 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10947, nbisL1-mrna-11723 |
| Salicaceae | Populus euphratica | 2 | populus_peu05539, populus_peu20943 |