Basic Information
Locus ID:
populus_peu20875
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7341107 | 7342427 | - | populus_peu20875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 22,318.49 Da | 55.86 | 58.21 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 150 | 191 | 3.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 197 | 1.51E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 197 | 1.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 191 | 3.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 191 | 11.840146 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38895.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011009793.1 | PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Populus euphratica] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7YWA8 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_038187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.522 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16300 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15839 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.261 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22341 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23539 |
| Salicaceae | Populus euphratica | 1 | populus_peu20875 |