Basic Information
Locus ID:
populus_peu20865
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7297616 | 7303636 | + | populus_peu20865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 56,756.32 Da | 50.01 | 78.60 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 324 | 501 | 2.07341E-117 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 323 | 430 | 2.2E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 6 | 97 | 6.7E-14 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 326 | 456 | 7.59E-20 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 117 | 1.3E-31 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 313 | 501 | 3.3E-73 | - |
| SMART | SM00232 | pad1_6 | 326 | 454 | 7.0E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 327 | 457 | 29.700785 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 320 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_011009866.1 | PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X2 [Populus euphratica] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8CL47 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_038193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology