Basic Information
Locus ID:
populus_peu20745
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 6508170 | 6510885 | - | populus_peu20745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 50,803.68 Da | 42.91 | 76.46 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 109 | 422 | 6.9E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 72 | 466 | 5.97E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 65 | 456 | 2.0E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 378 | 399 | 9800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 345 | 366 | 680.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 263 | 284 | 4400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 316 | 337 | 38.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 236 | 262 | 750.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 293 | 306 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 57 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_011011219.1 | PREDICTED: polygalacturonase At1g48100-like [Populus euphratica] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2XU12 | Polygalacturonase OS=Populus deltoides OX=3696 GN=H0E87_019306 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology